PPDB

PPDB	The Plant Proteome Database

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AT5G23420.1 high-mobility group box 6

Lab Annot.

Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G23420.2 11 Arabidopsis thaliana 6E-50 76 100 100 0 (0) C
AT5G23405.1 11 Arabidopsis thaliana 9E-21 194 37 51 0 (0) _
AT5G23405.2 11 Arabidopsis thaliana 3E-19 194 37 51 0 (0) _
Os08g01100.1 7 Oryza sativa 4E-46 199 48 61 0 (0) M
Os02g44930.1 7 Oryza sativa 1E-16 121 38 62 0 (0) _
Os09g37910.1 7 Oryza sativa 2E-15 100 41 60 4 (4) _
Zm00001eb198700_P004 agpv5 Zea mays 3E-47 176 52 64 0 (0) M
v1_GRMZM2G125648_P01 4a53 Zea mays 3E-47 176 52 64 1 (1) M
GRMZM2G125648_P01 3.21 Zea mays 3E-47 176 52 64 3 (3) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF2786(1) HMG_box(1) HMG_box_2(1) Nop14(1) Protamine_like(1) RRN3(2)
TargetP:	Chloroplast (Class 3 C0.675; M0.197; S0.020; _0.142)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	241 aa (-cTP 223)
Molecular Weight	26.98 kDA(-cTP 25.04)
PI	4.83(-cTP 4.70)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data