PPDB

The Plant Proteome Database

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AT5G23110.1   Zinc finger%2C C3HC4 type (RING finger) family protein

Lab Annot. Zinc finger, C3HC4 type (RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G73950.1 11Arabidopsis thaliana3E-068133590 (0)S
AT1G73950.2 11Arabidopsis thaliana5E-068133590 (0)S
Zm00001eb066370_P001 agpv5Zea mays0476252700 (0)_
v1_GRMZM2G084819_P02 4a53Zea mays0476252700 (0)_
GRMZM2G084819_P02 3.21Zea mays0476252700 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Prok-RING_4(1) zf-C3HC4(3) zf-C3HC4_2(2) zf-C3HC4_3(1)
TargetP: Cytoplasm (Class 2 C0.115; M0.105; S0.054; _0.876)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 4706 aa (-cTP 4643)
Molecular Weight 527.25 kDA(-cTP )
PI 5.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help