PPDB

The Plant Proteome Database

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AT5G22790.1   reticulata-related 1

Lab Annot. reticulate family member RER1
Mapman: 35.2 not assigned.unknown
Curated Location envelope-inner-integral (Pubmed: 23596191 )

TAIR curated location: chloroplast inner membrane12775770
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G37860.4 11Arabidopsis thaliana6E-16029375850 (0)C
AT2G37860.3 11Arabidopsis thaliana6E-160293758525 (25)C
AT2G37860.2 11Arabidopsis thaliana3E-108208758523 (23)C
Os04g44290.1 7Oryza sativa2E-16229376860 (0)C
Os07g13590.1 7Oryza sativa1E-14729372870 (0)M
Os03g27340.1 7Oryza sativa3E-339065760 (0)_
v1_GRMZM2G133012_P01 4a53Zea mays5E-16128975850 (0)C
Zm00001eb076950_P003 agpv5Zea mays5E-16128975850 (0)C
GRMZM2G133012_P01 3.21Zea mays5E-16128975850 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RETICULATA-like(2)
TargetP: Chloroplast (Class 1 C0.976; M0.025; S0.022; _0.062)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 3 TMs
TAT position:
Length 433 aa (-cTP 408)
Molecular Weight 46.83 kDA(-cTP 44.06)
PI 5.14(-cTP 4.97)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

12766230(Total chloroplast envelope)
16618929(MITO/PLASTID-LOPIT-callus)
19546170(mature pollen grains)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help