PPDB

PPDB	The Plant Proteome Database

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AT5G22790.1 reticulata-related 1

Lab Annot.

reticulate family member RER1
Mapman: 35.2 not assigned.unknown

Curated Location

envelope-inner-integral (Pubmed: 23596191 )

TAIR curated location: chloroplast inner membrane12775770

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G37860.4 11 Arabidopsis thaliana 6E-160 293 75 85 0 (0) C
AT2G37860.3 11 Arabidopsis thaliana 6E-160 293 75 85 27 (24) C
AT2G37860.2 11 Arabidopsis thaliana 3E-108 208 75 85 25 (23) C
Os04g44290.1 7 Oryza sativa 2E-162 293 76 86 0 (0) C
Os07g13590.1 7 Oryza sativa 1E-147 293 72 87 0 (0) M
Os03g27340.1 7 Oryza sativa 3E-33 90 65 76 0 (0) _
v1_GRMZM2G133012_P01 4a53 Zea mays 5E-161 289 75 85 0 (0) C
Zm00001eb076950_P003 agpv5 Zea mays 5E-161 289 75 85 0 (0) C
GRMZM2G133012_P01 3.21 Zea mays 5E-161 289 75 85 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RETICULATA-like(2)
TargetP:	Chloroplast (Class 1 C0.976; M0.025; S0.022; _0.062)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	3 TMs
TAT position:
Length	433 aa (-cTP 408)
Molecular Weight	46.83 kDA(-cTP 44.06)
PI	5.14(-cTP 4.97)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

12766230(Total chloroplast envelope)
16618929(MITO/PLASTID-LOPIT-callus)
19546170(mature pollen grains)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data