PPDB

 The Plant Proteome Database

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AT5G22650.1   histone deacetylase 2B
Lab Annot. HD2B (HISTONE DEACETYLASE 2B)
Mapman: 27.3.55 RNA.regulation of transcription.HDA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G22650.2 11Arabidopsis thaliana0306999926 (19)_
AT3G44750.1 11Arabidopsis thaliana3E-43287475611 (10)_
AT3G44750.2 11Arabidopsis thaliana4E-3828742535 (4)_
Os05g51830.1 7Oryza sativa1E-2792556813 (13)_
Os01g68160.1 7Oryza sativa9E-2431631460 (0)_
Os01g68160.2 7Oryza sativa1E-2131232460 (0)_
GRMZM5G898314_P01 3.21Zea mays6E-2411747622 (2)_
GRMZM5G898314_P02 3.21Zea mays7E-2411747622 (2)_
Zm00001eb365080_P001 agpv5Zea mays7E-2411747620 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CDC45(1) DNA_pol_phi(1) Merozoite_SPAM(1) Nop14(1) NPL(1) PPP4R2(1) SAPS(1) SDA1
TargetP: Cytoplasm (Class 2 C0.157; M0.097; S0.079; _0.830)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 306 aa (-cTP 263)
Molecular Weight 32.35 kDA(-cTP )
PI 4.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1475Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 4)
1476Detail       leaf [A. thaliana] co-IP GST-ClpSmut stroma clpc1 x clps (rep. 4)
1477Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 5)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2237Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2252Detail       seedlings [A. thaliana] total tissue gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 16287169(Cell Wall proteome)
15496452(nucleolus)
16358359(cell suspension (Gamborg))
17151019(vacuole - suspension cell)
19200160(flower-stage 12)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help