PPDB

PPDB	The Plant Proteome Database

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AT5G22650.1 histone deacetylase 2B

Lab Annot.

HD2B (HISTONE DEACETYLASE 2B)
Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G22650.2 11 Arabidopsis thaliana 0 306 99 99 22 (19) _
AT3G44750.1 11 Arabidopsis thaliana 3E-43 287 47 56 10 (10) _
AT3G44750.2 11 Arabidopsis thaliana 4E-38 287 42 53 4 (4) _
Os05g51830.1 7 Oryza sativa 1E-27 92 55 68 13 (13) _
Os01g68160.1 7 Oryza sativa 9E-24 316 31 46 0 (0) _
Os01g68160.2 7 Oryza sativa 1E-21 312 32 46 0 (0) _
GRMZM5G898314_P01 3.21 Zea mays 6E-24 117 47 62 2 (2) _
GRMZM5G898314_P02 3.21 Zea mays 7E-24 117 47 62 2 (2) _
Zm00001eb365080_P001 agpv5 Zea mays 7E-24 117 47 62 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CDC45(1) DNA_pol_phi(1) Merozoite_SPAM(1) Nop14(1) NPL(1) PPP4R2(1) SAPS(1) SDA1
TargetP:	Cytoplasm (Class 2 C0.157; M0.097; S0.079; _0.830)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	306 aa (-cTP 263)
Molecular Weight	32.35 kDA(-cTP )
PI	4.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1475	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 4)
1476	Detail								leaf [A. thaliana]	co-IP GST-ClpSmut stroma	clpc1 x clps (rep. 4)
1477	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 5)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2312	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

16287169(Cell Wall proteome)
15496452(nucleolus)
16358359(cell suspension (Gamborg))
17151019(vacuole - suspension cell)
19200160(flower-stage 12)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data