PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G22630.1   arogenate dehydratase 5

Lab Annot. arogenate dehydratase/ prephenate dehydratase (ADT5)
Mapman: 13.1.6.3.1 amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase
Curated Location plastid stroma (Pubmed: 23198870 19136569 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G44720.1 11Arabidopsis thaliana0422818777 (11)C
AT1G08250.1 11Arabidopsis thaliana0381748218 (5)C
AT2G27820.1 11Arabidopsis thaliana0367738393 (21)C
Os04g33390.1 7Oryza sativa039070810 (0)C
Os09g39230.1 7Oryza sativa037872822 (2)C
Os09g39260.1 7Oryza sativa1E-17838670812 (2)C
v1_GRMZM2G466543_P01 4a53Zea mays0373728217 (17)M
Zm00001eb096110_P001 agpv5Zea mays037372820 (0)M
v1_GRMZM2G437912_P01 4a53Zea mays039471800 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ACT(1) PDT(2)
TargetP: Chloroplast (Class 2 C0.869; M0.023; S0.001; _0.257)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 425 aa (-cTP 387)
Molecular Weight 45.93 kDA(-cTP 41.71)
PI 6.57(-cTP 5.86)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
871Detail       leaf [A. thaliana] chloroplast stromawild-type
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help