PPDB

The Plant Proteome Database

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AT5G22450.1   spectrin beta chain%2C brain

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G22450.2 11Arabidopsis thaliana011541001000 (0)C
AT5G22450.3 11Arabidopsis thaliana011541001000 (0)C
AT2G19390.2 11Arabidopsis thaliana7E-62128126430 (0)_
Os01g73620.1 7Oryza sativa7E-112128529470 (0)_
Os01g73620.2 7Oryza sativa4E-109128429470 (0)_
Os05g01690.1 7Oryza sativa1E-79125527440 (0)_
Zm00001eb267350_P001 agpv5Zea mays3E-100126030470 (0)_
Zm00001eb267350_P002 agpv5Zea mays1E-94111831470 (0)C
GRMZM2G013100_P01 3.21Zea mays3E-7785031490 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glyoxalase_2(1)
TargetP: Chloroplast (Class 3 C0.776; M0.098; S0.011; _0.262)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position: 71
Length 1154 aa (-cTP 1101) (-lTP 1081)
Molecular Weight 126.08 kDA(-cTP 120.41)(-lTP 118.35)
PI 8.97(-cTP 8.83)(-lTP 8.879)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help