PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G22200.1   Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Lab Annot.
Mapman: 35.1 not assigned.no ontology
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G44220.1 11Arabidopsis thaliana4E-11521073840 (0)_
AT3G52470.1 11Arabidopsis thaliana6E-7320851672 (1)S
AT3G11660.1 11Arabidopsis thaliana4E-7021048681 (1)M
Os11g05860.1 7Oryza sativa3E-6221246614 (4)_
Os12g06260.1 7Oryza sativa8E-6121443620 (0)_
Os02g33550.1 7Oryza sativa9E-57190466627 (27)_
v1_GRMZM2G120983_P01 4a53Zea mays1E-55177486912 (12)S
GRMZM5G800014_P01 3.21Zea mays1E-55177486916 (16)S
Zm00001eb083540_P001 agpv5Zea mays1E-5517748690 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4307(1) LEA_2(1)
TargetP: Cytoplasm (Class 5 C0.004; M0.818; S0.014; _0.873)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 210 aa (-cTP 132)
Molecular Weight 23.74 kDA(-cTP )
PI 9.14(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help