PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G22010.1 replication factor C1

Lab Annot.

AAA, BRCT and RFC1 domains
Mapman: 26.55* AAA domain

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G22010.2 11 Arabidopsis thaliana 0 908 100 100 0 (0) _
AT1G04730.1 11 Arabidopsis thaliana 2E-19 233 28 45 0 (0) _
AT1G04730.3 11 Arabidopsis thaliana 3E-19 233 28 45 0 (0) _
Os11g36390.1 7 Oryza sativa 0 1005 59 72 2 (2) _
Os03g15810.1 7 Oryza sativa 7E-15 207 31 45 0 (0) _
Os03g15580.1 7 Oryza sativa 1E-14 273 23 43 1 (1) C
v1_GRMZM2G457381_P01 4a53 Zea mays 0 964 59 73 16 (16) C
Zm00001eb114240_P001 agpv5 Zea mays 0 964 59 73 0 (0) C
GRMZM2G457381_P01 3.21 Zea mays 0 964 59 73 11 (11) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_14(1) AAA_16(2) AAA_18(1) AAA_2(1) AAA_22(1) AAA_28(1) AAA_30(1) AAA_
TargetP:	Cytoplasm (Class 5 C0.331; M0.199; S0.080; _0.511)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	956 aa (-cTP 916)
Molecular Weight	104.38 kDA(-cTP )
PI	9.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
20733066(ABA effected phosphoproteome)
20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)

Comparative Proteomics Data