PPDB

The Plant Proteome Database

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AT5G21160.1   LA RNA-binding protein

Lab Annot. LA RNA-binding protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G21160.2 11Arabidopsis thaliana082410010017 (12)_
AT5G21160.3 11Arabidopsis thaliana082410010017 (12)_
AT4G35890.1 11Arabidopsis thaliana7E-2117638500 (0)C
Os01g16110.2 7Oryza sativa4E-16191539516 (6)_
Os01g16110.1 7Oryza sativa4E-15891539516 (6)_
Os03g06070.1 7Oryza sativa8E-2412045632 (2)_
Zm00001eb333210_P002 agpv5Zea mays4E-9234449660 (0)_
GRMZM2G139952_P02 3.21Zea mays3E-9134449662 (2)M
GRMZM2G139952_P01 3.21Zea mays7E-9033849662 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: La(1)
TargetP: Cytoplasm (Class 2 C0.172; M0.050; S0.022; _0.914)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 826 aa (-cTP 739)
Molecular Weight 91.38 kDA(-cTP )
PI 7.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1547Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2257Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19376835(leaf phosphoproteins)
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help