PPDB

PPDB	The Plant Proteome Database

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AT5G20320.1 dicer-like 4

Lab Annot.

dicer-like 4
Mapman: 27.1.20 RNA.processing.degradation dicer

Curated Location

TAIR curated location: nucleus15821876

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G20320.2 11 Arabidopsis thaliana 0 1702 99 99 1 (1) _
AT5G20320.3 11 Arabidopsis thaliana 0 1477 100 100 0 (0) S
AT3G03300.1 11 Arabidopsis thaliana 0 1459 33 52 0 (0) _
Os04g43050.1 7 Oryza sativa 0 1575 43 60 0 (0) _
Os04g43050.3 6 Oryza sativa 0 1066 44 61 0 (0) _
Os04g43050.2 6 Oryza sativa 0 1017 43 61 0 (0) _
v1_GRMZM2G413853_P02 4a53 Zea mays 0 1472 31 48 0 (0) _
GRMZM2G413853_P01 3.21 Zea mays 0 1470 31 48 0 (0) _
v1_GRMZM2G413853_P01 4a53 Zea mays 0 1470 31 48 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(2) DEAD(1) Dicer_dimer(2) DND1_DSRM(1) dsrm(3) Helicase_C(1) PAZ(1) ResII
TargetP:	Cytoplasm (Class 1 C0.102; M0.076; S0.027; _0.936)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1702 aa (-cTP 1677)
Molecular Weight	191.28 kDA(-cTP )
PI	6.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1478	Detail								leaf [A. thaliana]	co-IP GST-ClpSmut stroma	clpc1 x clps (rep. 5)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data