PPDB

PPDB	The Plant Proteome Database

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AT5G20230.1 blue-copper-binding protein

Lab Annot.

plastocyanin-like domain-containing protein
Mapman: 26.19 misc.plastocyanin-like

Curated Location

TAIR curated location: anchored to membrane12068095,12805588

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G72230.1 11 Arabidopsis thaliana 7E-23 166 39 54 5 (5) S
AT3G60280.1 11 Arabidopsis thaliana 3E-21 107 42 57 0 (0) S
AT3G60270.1 11 Arabidopsis thaliana 5E-20 107 41 57 0 (0) S
Os04g46130.1 7 Oryza sativa 1E-19 117 40 51 2 (2) S
Os03g59280.1 7 Oryza sativa 6E-19 125 39 53 0 (0) S
Os09g29390.1 7 Oryza sativa 7E-19 99 41 54 0 (0) C
GRMZM2G023847_P01 3.21 Zea mays 5E-23 116 37 56 0 (0) S
Zm00001eb033440_P001 agpv5 Zea mays 5E-23 116 37 56 0 (0) S
v1_GRMZM2G023847_P01 4a53 Zea mays 5E-23 116 37 56 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cu_bind_like(1)
TargetP:	Secreted (Class 1 C0.007; M0.016; S0.992; _0.072)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	1 TMs
TAT position:
Length	196 aa (-cTP 177)
Molecular Weight	20.05 kDA(-cTP )
PI	4.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1448	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 1)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2006	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2008	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
16247729(mature Pollen)
12805588(GBI-anchored-callus)
14517339(GPI anchored suspension cells)
16602701(GPI-anchored Plasma membrane suspension cells)
17317660(Plasma Membrane proteome)
18998720(SA-induced secreted proteome (cell culture))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data