PPDB

The Plant Proteome Database

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AT5G20190.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. Tetratricopeptide repeat (TPR) protein
Mapman: 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G80130.1 11Arabidopsis thaliana1E-4010162780 (0)C
AT4G32340.1 11Arabidopsis thaliana5E-3411556760 (0)M
AT4G17940.1 11Arabidopsis thaliana2E-329655700 (0)M
Os06g40440.1 7Oryza sativa6E-4011154750 (0)C
Os04g43160.1 7Oryza sativa9E-299747730 (0)C
Os10g42610.1 7Oryza sativa5E-269446680 (0)C
Zm00001eb386480_P002 agpv5Zea mays2E-3910860750 (0)C
Zm00001eb386480_P001 agpv5Zea mays1E-3810062780 (0)C
GRMZM2G056093_P01 3.21Zea mays1E-3810062780 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TPR_1(3) TPR_12(1) TPR_14(2) TPR_17(3) TPR_19(3) TPR_2(3) TPR_8(2)
TargetP: Chloroplast (Class 2 C0.878; M0.134; S0.006; _0.036)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 290 aa (-cTP 226)
Molecular Weight 31.82 kDA(-cTP 24.88)
PI 5.05(-cTP 4.78)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2287Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help