PPDB

 The Plant Proteome Database

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AT5G20160.1   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Lab Annot. ribosomal protein L7Ae/L30e/S12e/Gadd45 protein
Mapman: 29.2.1.2.2.57 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G22380.1 11Arabidopsis thaliana1E-90128991008 (4)_
AT5G20160.2 11Arabidopsis thaliana4E-84160808031 (19)_
AT4G12600.1 11Arabidopsis thaliana6E-77128969610 (6)_
Os03g13800.1 7Oryza sativa9E-74128919631 (31)_
Os10g03540.1 7Oryza sativa1E-6412387919 (9)_
Os02g49610.1 7Oryza sativa1E-1912134530 (0)_
v1_GRMZM2G140799_P01 4a53Zea mays4E-70124909559 (59)_
Zm00001eb399010_P002 agpv5Zea mays4E-7012490950 (0)_
GRMZM2G140799_P01 3.21Zea mays4E-701249095103 (57)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PELOTA_1(1) Ribosomal_L7Ae(1)
TargetP: Cytoplasm (Class 2 C0.046; M0.115; S0.091; _0.863)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 128 aa (-cTP 72)
Molecular Weight 13.90 kDA(-cTP )
PI 6.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1622Detail        [A. thaliana] m48
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2021Detail       leaf [A. thaliana] total leaf tissue  
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help