PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G20000.1   AAA-type ATPase family protein
Lab Annot. 26S proteasome AAA-ATPase subunit (RPT6b)
Mapman: 29.5.11.20.2* protein.degradation.ubiquitin.proteasome.26S
Curated Location cytosol

TAIR curated location: nucleus11742986
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G19990.1 11Arabidopsis thaliana04199698126 (65)_
AT5G19990.3 11Arabidopsis thaliana041996980 (0)_
AT5G19990.2 11Arabidopsis thaliana0352991000 (0)_
Os02g11050.1 7Oryza sativa0388959815 (15)_
Os06g39870.1 7Oryza sativa039590944 (4)_
Os06g09290.1 7Oryza sativa6E-118347536919 (19)_
GRMZM2G107362_P02 3.21Zea mays03889598128 (47)_
Zm00001eb205500_P002 agpv5Zea mays038895980 (0)_
v1_GRMZM2G107362_P04 4a53Zea mays0387959832 (32)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_11(2) AAA_14(1) AAA_16(1) AAA_17(1) AAA_18(1) AAA_19(1) AAA_2(1) AAA_
TargetP: Cytoplasm (Class 3 C0.321; M0.062; S0.039; _0.838)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 419 aa (-cTP 406)
Molecular Weight 47.16 kDA(-cTP )
PI 8.69(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2214Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
19525416(leaf (wt and clpr4-1 mutant))
20516081(tagged-26S proteasome-affinity)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help