PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G19440.1   NAD(P)-binding Rossmann-fold superfamily protein
Lab Annot. cinnamyl-alcohol dehydrogenase (CAD)
Mapman: 26.11 misc.alcohol dehydrogenases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G51410.1 11Arabidopsis thaliana032475890 (0)_
AT1G09510.1 11Arabidopsis thaliana8E-13131659750 (0)_
AT1G09490.1 11Arabidopsis thaliana8E-126315567371 (52)S
Os01g34480.1 7Oryza sativa0326728613 (13)_
Os01g34480.2 7Oryza sativa1E-15727973887 (7)_
Os01g34480.3 7Oryza sativa9E-12022173870 (0)_
v1_GRMZM2G179981_P01 4a53Zea mays0320728842 (42)_
GRMZM2G179981_P01 3.21Zea mays0320728856 (51)_
Zm00001eb237050_P001 agpv5Zea mays1E-15427373890 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 3Beta_HSD(1) adh_short(1) Epimerase(1) GDP_Man_Dehyd(1) Herpes_UL33(1) KR(1) NAD
TargetP: Cytoplasm (Class 4 C0.049; M0.170; S0.200; _0.510)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 326 aa (-cTP 291)
Molecular Weight 35.59 kDA(-cTP )
PI 6.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2193Detail        [A. thaliana] total soluble P3-strepII 26
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 16358359(cell suspension (Gamborg))
16358359(cell suspension (M&Skoog))
17407188(cotyledon)
17644812(plasma membrane - suspension cells)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
18716313(secreted proteins (cell culture))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
20405473(roots - TRX-y interacting proteins)
19816138(rosette leaves)
19888209(80S polysomal fraction)
19888209(leaves)
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21311031(lysine-acetylated leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
22430844(Golgi-cell-culture)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help