PPDB

The Plant Proteome Database

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AT5G19230.1   Glycoprotein membrane precursor GPI-anchored

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G19230.2 11Arabidopsis thaliana1E-1351891001000 (0)S
AT5G19240.1 11Arabidopsis thaliana1E-71193637223 (15)S
AT5G19250.1 11Arabidopsis thaliana2E-62187647143 (43)S
Os07g45060.1 7Oryza sativa8E-29163385612 (12)S
Zm00001eb110400_P001 agpv5Zea mays3E-2716339540 (0)S
GRMZM2G322618_P01 3.21Zea mays3E-2716339540 (0)S
v1_GRMZM2G322618_P01 4a53Zea mays3E-2716339540 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SCP(1)
TargetP: Secreted (Class 1 C0.003; M0.032; S0.969; _0.053)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 189 aa (-cTP 166)
Molecular Weight 20.51 kDA(-cTP )
PI 5.85(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2248Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

12805588(GBI-anchored-callus)
17317660(Plasma Membrane proteome)
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help