PPDB

 The Plant Proteome Database

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AT5G18670.1   beta-amylase 3
Lab Annot. beta-amylase 9 (BAM9 or BMY3)
Mapman: 2.2.2.1 major CHO metabolism.degradation.starch.starch cleavage
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G17090.1 11Arabidopsis thaliana1E-1044373856459 (181)C
AT3G23920.1 11Arabidopsis thaliana5E-103452385756 (15)C
AT5G55700.1 11Arabidopsis thaliana2E-91439365510 (1)_
Os07g47120.1 7Oryza sativa1E-14343647640 (0)M
Os03g04770.1 7Oryza sativa9E-10445737570 (0)M
Os03g22790.1 7Oryza sativa6E-10246343570 (0)C
GRMZM2G181284_P01 3.21Zea mays3E-13644145651 (1)C
v1_GRMZM2G181284_P01 4a53Zea mays3E-13644145651 (0)C
GRMZM2G082034_P01 3.21Zea mays1E-11443745604 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_14(1) Glyco_hydro_35(1)
TargetP: Cytoplasm (Class 5 C0.205; M0.228; S0.011; _0.235)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 536 aa (-cTP 481)
Molecular Weight 58.28 kDA(-cTP )
PI 5.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1942Detail       leaf [A. thaliana] stroma WT stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to flower)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help