PPDB

PPDB	The Plant Proteome Database

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AT5G18540.1 E3 ubiquitin-protein ligase

Lab Annot.

unknown protein
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G18540.2 11 Arabidopsis thaliana 9E-112 168 98 98 0 (0) _
AT5G18540.3 11 Arabidopsis thaliana 5E-77 112 100 100 0 (0) _
AT5G18540.4 11 Arabidopsis thaliana 5E-77 112 100 100 0 (0) _
Os07g47340.1 7 Oryza sativa 7E-34 97 63 83 0 (0) C
GRMZM2G020606_P01 3.21 Zea mays 2E-31 110 61 77 0 (0) C
Zm00001eb330210_P001 agpv5 Zea mays 3E-31 126 59 76 0 (0) M
Zm00001eb330210_P002 agpv5 Zea mays 6E-30 110 63 80 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GAGA_bind(1) Med19(1) Peptidase_S49_N(1) Presenilin(1) SPOUT_MTase(1) SR-25(1) Y
TargetP:	Cytoplasm (Class 4 C0.430; M0.038; S0.015; _0.751)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	168 aa (-cTP 129)
Molecular Weight	18.47 kDA(-cTP )
PI	10.05(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data