PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G18475.1   Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G16420.1 11Arabidopsis thaliana2E-5845028512 (2)M
AT5G16420.2 11Arabidopsis thaliana2E-5845028510 (0)M
AT5G16420.4 11Arabidopsis thaliana2E-5845028510 (0)M
Os02g26890.1 7Oryza sativa2E-11046339590 (0)C
Os04g40130.1 7Oryza sativa3E-5030030550 (0)S
Os03g06910.1 7Oryza sativa2E-4941827520 (0)M
GRMZM2G329293_P01 3.21Zea mays1E-11246140590 (0)C
v1_GRMZM2G329293_P01 4a53Zea mays1E-11246140590 (0)C
Zm00001eb279250_P001 agpv5Zea mays1E-11246140590 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ANAPC3(3) ATP13(5) BTAD(4) MRP-S27(5) PPR(11) PPR_1(8) PPR_2(10) PPR_3(5) PPR_lo
TargetP: Chloroplast (Class 3 C0.839; M0.285; S0.010; _0.072)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 506 aa (-cTP 480)
Molecular Weight 57.29 kDA(-cTP 54.22)
PI 8.91(-cTP 8.75)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help