PPDB

PPDB	The Plant Proteome Database

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AT5G18420.1 CCR4-NOT transcription complex subunit

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G18420.2 11 Arabidopsis thaliana 0 442 99 99 14 (8) _
AT5G18420.3 11 Arabidopsis thaliana 0 442 99 99 14 (8) _
AT5G18420.4 11 Arabidopsis thaliana 0 334 100 100 0 (0) _
Os11g13694.1 7 Oryza sativa 4E-145 433 50 69 2 (2) C
Os12g09610.1 7 Oryza sativa 1E-141 433 50 66 4 (4) C
Zm00001eb138450_P005 agpv5 Zea mays 4E-157 432 53 71 0 (0) _
GRMZM2G098815_P03 3.21 Zea mays 4E-157 432 53 71 0 (0) _
v1_GRMZM2G098815_P02 4a53 Zea mays 4E-157 432 53 71 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CNOT11(2)
TargetP:	Cytoplasm (Class 4 C0.154; M0.038; S0.313; _0.513)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	441 aa (-cTP 364)
Molecular Weight	50.32 kDA(-cTP )
PI	5.19(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2303	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data