PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G18400.1   Cytokine-induced anti-apoptosis inhibitor 1%2C Fe-S biogenesi

Lab Annot. unknown protein DUF689 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G18400.2 11Arabidopsis thaliana026910010027 (10)_
AT5G18400.3 11Arabidopsis thaliana026910010027 (10)_
AT5G18362.1 10Arabidopsis thaliana6E-349583870 (0)_
Os04g57810.2 7Oryza sativa1E-76268516519 (19)_
Os04g57810.1 7Oryza sativa1E-76268516519 (19)_
Os04g58564.1 7Oryza sativa4E-7526550645 (5)S
Zm00001eb066470_P001 agpv5Zea mays3E-7327053650 (0)_
v1_GRMZM2G068059_P03 4a53Zea mays3E-73270536530 (30)_
GRMZM2G068059_P03 3.21Zea mays3E-73270536540 (26)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CIAPIN1(2) Methyltransf_11(1)
TargetP: Secreted (Class 4 C0.020; M0.024; S0.711; _0.417)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 269 aa (-cTP 261)
Molecular Weight 29.10 kDA(-cTP )
PI 4.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2013Detail       leaf [A. thaliana] total leaf tissue wt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2290Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help