PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G17420.1   Cellulose synthase family protein
Lab Annot. cellulose synthase, catalytic subunit (IRX3
Mapman: 10.2.1 cell wall.cellulose synthesis.cellulose synthase
Curated Location extracellular (Pubmed: 12897249 )

TAIR curated location: plasma membrane10330464
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05170.1 11Arabidopsis thaliana01065677814 (10)_
AT4G32410.1 11Arabidopsis thaliana0107365778 (5)_
AT5G09870.1 11Arabidopsis thaliana0107963783 (3)_
Os09g25490.1 7Oryza sativa01057808812 (12)_
Os07g24190.1 7Oryza sativa01102667727 (27)_
Os07g10770.1 7Oryza sativa01070687834 (34)_
GRMZM2G142898_P02 3.21Zea mays0105580893 (3)_
v1_GRMZM2G142898_P02 4a53Zea mays0105580892 (2)_
Zm00001eb313250_P001 agpv5Zea mays0105580890 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Baculo_IE-1(1) Cellulose_synt(1) FYVE_2(1) Glyco_trans_2_3(2) Prok-RING_1(1) zf-
TargetP: Cytoplasm (Class 2 C0.067; M0.168; S0.158; _0.859)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 8 TMs
TAT position:
Length 1026 aa (-cTP 1022)
Molecular Weight 115.80 kDA(-cTP )
PI 6.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1596Detail        [A. thaliana]  
1670Detail        [A. thaliana]  
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2271Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help