PPDB

The Plant Proteome Database

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AT5G17410.2   Spc97 / Spc98 family of spindle pole body (SBP) component

Lab Annot. tubulin protein
Mapman: 31.1 cell.organisation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G17410.1 11Arabidopsis thaliana067999991 (1)_
AT5G06680.1 11Arabidopsis thaliana2E-4157225441 (1)_
AT3G53760.1 11Arabidopsis thaliana9E-2369621372 (2)_
Os04g42330.1 7Oryza sativa0704687811 (11)_
Os04g42330.2 7Oryza sativa0699677811 (11)_
Os09g27370.1 7Oryza sativa2E-3759724452 (2)_
GRMZM2G071518_P01 3.21Zea mays070367782 (2)M
Zm00001eb425980_P001 agpv5Zea mays070367780 (0)M
v1_GRMZM2G071518_P01 4a53Zea mays070367783 (3)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: GCP_C_terminal(2) GCP_N_terminal(3)
TargetP: Chloroplast (Class 5 C0.442; M0.120; S0.042; _0.377)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 679 aa (-cTP 648) (-lTP 572)
Molecular Weight 77.03 kDA(-cTP 73.33)(-lTP 65.12)
PI 6.77(-cTP 6.65)(-lTP 7.693)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help