PPDB

PPDB	The Plant Proteome Database

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AT5G17200.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G15720.1 11 Arabidopsis thaliana 5E-108 392 44 61 0 (0) S
AT3G15720.3 11 Arabidopsis thaliana 5E-108 392 44 61 0 (0) S
AT4G35670.1 11 Arabidopsis thaliana 4E-106 429 42 59 0 (0) S
Os01g07790.1 7 Oryza sativa 3E-83 384 41 56 0 (0) _
Os07g10740.1 7 Oryza sativa 2E-82 396 37 54 0 (0) S
Os01g66710.1 7 Oryza sativa 5E-80 399 37 54 0 (0) S
Zm00001eb400080_P001 agpv5 Zea mays 1E-81 369 39 56 0 (0) S
GRMZM2G034835_P01 3.21 Zea mays 2E-81 369 39 56 0 (0) _
v1_GRMZM2G034835_P01 4a53 Zea mays 2E-81 369 39 56 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	End_N_terminal(2) Glyco_hydro_28(2) Pectate_lyase_3(2)
TargetP:	Secreted (Class 1 C0.012; M0.015; S0.990; _0.090)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	421 aa (-cTP 381)
Molecular Weight	45.23 kDA(-cTP )
PI	8.77(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data