PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G17000.1   Zinc-binding dehydrogenase family protein

Lab Annot. NADP-dependent oxidoreductase, putative
Mapman: 26.7 misc.oxidases - copper, flavone etc.
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G16970.1 11Arabidopsis thaliana03459195167 (93)_
AT5G16990.1 11Arabidopsis thaliana0343909423 (16)_
AT3G03080.1 11Arabidopsis thaliana034479900 (0)_
Os04g41960.1 7Oryza sativa8E-16634864788 (8)_
Os12g12580.1 7Oryza sativa4E-155346627716 (16)_
Os12g12590.1 7Oryza sativa9E-14634459740 (0)_
Zm00001eb333970_P001 agpv5Zea mays5E-15535461760 (0)_
v1_GRMZM2G328094_P01 4a53Zea mays5E-155354617650 (50)_
GRMZM2G328094_P01 3.21Zea mays5E-155354617690 (45)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ADH_N_2(1) ADH_zinc_N(1) ADH_zinc_N_2(1) DUF2855(1)
TargetP: Cytoplasm (Class 2 C0.106; M0.082; S0.099; _0.824)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 345 aa (-cTP 335)
Molecular Weight 38.12 kDA(-cTP )
PI 6.46(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

16358359(cell suspension (M&Skoog))
15815986(Leaf)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help