PPDB

PPDB	The Plant Proteome Database

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AT5G16880.1 Target of Myb protein 1

Lab Annot.

VHS domain-containing protein / GAT domain-containing protein
Mapman: 31.4 cell.vesicle transport

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G16880.2 11 Arabidopsis thaliana 0 407 100 100 45 (14) _
AT5G16880.4 11 Arabidopsis thaliana 0 407 100 100 0 (0) _
AT5G16880.3 11 Arabidopsis thaliana 0 288 99 99 30 (11) _
Os02g46962.2 7 Oryza sativa 0 409 69 80 8 (8) _
Os02g46962.1 7 Oryza sativa 0 409 69 80 8 (8) _
Os02g46962.3 7 Oryza sativa 0 409 69 80 8 (8) _
GRMZM2G027741_P03 3.21 Zea mays 0 385 70 82 53 (11) _
Zm00001eb187900_P004 agpv5 Zea mays 0 385 70 80 0 (0) _
v1_GRMZM2G054354_P02 4a53 Zea mays 0 385 70 80 9 (9) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AdoHcyase(2) DUF3361(2) GAT(2) PolyA_pol_RNAbd(1) VHS(2)
TargetP:	Cytoplasm (Class 2 C0.182; M0.087; S0.111; _0.907)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	407 aa (-cTP 375)
Molecular Weight	45.31 kDA(-cTP )
PI	4.75(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1494	Detail								leaf [A. thaliana]
1550	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1556	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2319	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19376835(leaf phosphoproteins)
21693672(wound-regulated leaf proteome (AOS mutant))
21693672(wound-regulated leaf proteome (wt))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data