PPDB

PPDB	The Plant Proteome Database

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AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G47120.2 11 Arabidopsis thaliana 9E-06 81 37 56 0 (0) _
Os04g41910.1 7 Oryza sativa 1E-173 500 53 70 0 (0) _
Os04g41910.2 7 Oryza sativa 2E-155 462 52 70 0 (0) _
Zm00001eb196230_P002 agpv5 Zea mays 0 505 55 72 0 (0) _
v1_GRMZM2G171660_P01 4a53 Zea mays 0 505 55 72 0 (0) _
GRMZM2G171660_P01 3.21 Zea mays 0 505 55 72 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF5137(2) GYF(2) GYF_2(2) RRM_1(2) RRM_7(1) RRM_occluded(2)
TargetP:	Cytoplasm (Class 2 C0.192; M0.105; S0.073; _0.838)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	519 aa (-cTP 501)
Molecular Weight	57.89 kDA(-cTP )
PI	4.74(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data