PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G16140.1   Peptidyl-tRNA hydrolase family protein
Lab Annot. peptidyl-tRNA hydrolase
Mapman: 29.2.5 protein.synthesis.release
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G16140.2 11Arabidopsis thaliana02401001004 (3)_
AT5G38290.2 11Arabidopsis thaliana2E-110241667721 (17)C
AT5G38290.1 11Arabidopsis thaliana2E-110241667721 (17)C
Os03g22610.2 7Oryza sativa7E-7419356720 (0)M
Os01g49900.1 7Oryza sativa4E-7318955742 (2)M
Os05g47630.1 7Oryza sativa3E-6818950730 (0)M
Zm00001eb335300_P001 agpv5Zea mays2E-10622466810 (0)C
Zm00001eb335300_P003 agpv5Zea mays2E-10622466810 (0)C
GRMZM2G132021_P03 3.21Zea mays2E-106224668147 (44)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pept_tRNA_hydro(1)
TargetP: Cytoplasm (Class 5 C0.304; M0.279; S0.037; _0.497)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 240 aa (-cTP 212)
Molecular Weight 26.94 kDA(-cTP )
PI 9.67(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help