PPDB

PPDB	The Plant Proteome Database

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AT5G16090.1 RAD23 UV excision repair family protein

Lab Annot.

INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-
Mapman: 29.5.11.1 protein.degradation.ubiquitin.ubiquitin

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G02540.2 11 Arabidopsis thaliana 1E-24 76 64 78 20 (8) _
AT3G02540.1 11 Arabidopsis thaliana 5E-24 76 64 78 31 (12) _
AT3G02540.3 11 Arabidopsis thaliana 5E-24 76 64 78 29 (10) _
Os09g24200.1 7 Oryza sativa 7E-21 101 49 71 0 (0) _
Os09g24200.2 7 Oryza sativa 7E-21 101 49 71 0 (0) _
Os06g15360.2 7 Oryza sativa 6E-19 102 48 64 38 (38) _
GRMZM2G061620_P06 3.21 Zea mays 2E-21 102 50 66 1 (1) M
v1_GRMZM2G061620_P06 4a53 Zea mays 2E-21 102 50 66 1 (1) M
v1_GRMZM2G105772_P03 4a53 Zea mays 2E-21 102 50 66 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BAF(1) Rad60-SLD(1) UBA(1) UBA_3(1) ubiquitin(1) Ubiquitin_2(1) Ubiquitin_4(1) X
TargetP:	Cytoplasm (Class 2 C0.086; M0.092; S0.080; _0.886)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	171 aa (-cTP 148)
Molecular Weight	19.54 kDA(-cTP )
PI	5.22(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data