PPDB

The Plant Proteome Database

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AT5G16010.1   3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Lab Annot. 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase) family
Mapman: 17.3.1.1.1 hormone metabolism.brassinosteroid.synthesis-degradation.BRs.DET2
Curated Location envelope (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G55360.1 11Arabidopsis thaliana2E-14130335065 (59)_
AT2G38050.1 11Arabidopsis thaliana3E-1310833620 (0)S
AT2G16530.2 11Arabidopsis thaliana2E-0911830500 (0)_
Os07g06800.1 7Oryza sativa3E-6825248640 (0)S
Os01g63260.1 7Oryza sativa5E-1411033580 (0)_
Os01g05670.1 7Oryza sativa2E-13130305062 (62)_
v1_GRMZM2G394968_P01 4a53Zea mays5E-75267526910 (10)S
GRMZM2G394968_P01 3.21Zea mays5E-7526752693 (3)S
Zm00001eb300560_P001 agpv5Zea mays5E-7526752690 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1295(1) PEMT(2) Steroid_dh(1)
TargetP: Cytoplasm (Class 5 C0.025; M0.044; S0.214; _0.367)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 6 TMs
TAT position:
Length 268 aa (-cTP 193)
Molecular Weight 30.13 kDA(-cTP )
PI 9.38(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help