PPDB

The Plant Proteome Database

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AT5G15610.1   Proteasome component (PCI) domain protein

Lab Annot. Proteasome component (PCI) domain protein
Mapman: 29.5.11 protein.degradation.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G15610.2 11Arabidopsis thaliana044293935 (4)_
AT3G02200.2 11Arabidopsis thaliana04467585105 (74)_
AT3G02200.1 11Arabidopsis thaliana0359839290 (61)_
Os04g01290.1 7Oryza sativa6E-161448527030 (30)_
Os04g01290.3 7Oryza sativa2E-10732350684 (4)M
Os04g01290.2 7Oryza sativa2E-10732350684 (4)M
v1_GRMZM2G336815_P01 4a53Zea mays5E-170447537248 (47)_
GRMZM2G336815_P01 3.21Zea mays5E-170447537258 (50)_
Zm00001eb337010_P001 agpv5Zea mays5E-17044753720 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: eIF3m_C_helix(1) PCI(1)
TargetP: Cytoplasm (Class 2 C0.084; M0.122; S0.135; _0.781)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 442 aa (-cTP 417)
Molecular Weight 49.77 kDA(-cTP )
PI 5.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(contaminants cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help