PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G15320.1   ATP synthase E chain
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G15320.2 11Arabidopsis thaliana9E-2853949434 (31)S
AT3G01130.1 11Arabidopsis thaliana2E-1753798439 (38)S
AT3G01130.7 11Arabidopsis thaliana2E-175379840 (0)S
Os04g02670.1 7Oryza sativa1E-1253586917 (17)S
Zm00001eb425810_P002 agpv5Zea mays4E-145360710 (0)S
GRMZM2G125452_P01 3.21Zea mays7E-1453607112 (12)C
Zm00001eb078460_P001 agpv5Zea mays9E-145358710 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ATP-synt_E(1)
TargetP: Secreted (Class 4 C0.036; M0.209; S0.544; _0.083)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 53 aa (-cTP 34)
Molecular Weight 5.60 kDA(-cTP )
PI 10.22(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1420Detail        [A. thaliana]  
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1596Detail        [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21311031(mitochondria)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help