PPDB

PPDB	The Plant Proteome Database

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AT5G15270.1 RNA-binding KH domain-containing protein

Lab Annot.

RNA-binding KH domain-containing protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G15270.2 11 Arabidopsis thaliana 0 548 100 100 1 (1) _
AT5G15270.3 11 Arabidopsis thaliana 0 533 100 100 0 (0) _
AT1G14170.3 11 Arabidopsis thaliana 5E-147 480 49 70 0 (0) M
Os03g25970.1 7 Oryza sativa 0 511 55 73 12 (12) _
Os03g25970.2 7 Oryza sativa 0 511 55 73 12 (12) _
Os10g35220.2 7 Oryza sativa 6E-103 478 40 59 0 (0) _
v1_GRMZM2G084540_P01 4a53 Zea mays 0 551 52 72 21 (21) _
Zm00001eb018350_P002 agpv5 Zea mays 0 551 52 72 0 (0) _
v1_GRMZM2G084540_P02 4a53 Zea mays 0 551 52 72 21 (21) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	H-kinase_dim(2) KH_1(4) KH_2(4) KH_4(4) KH_5(4) Osteopontin(3)
TargetP:	Cytoplasm (Class 2 C0.171; M0.200; S0.051; _0.804)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	548 aa (-cTP 536)
Molecular Weight	59.71 kDA(-cTP )
PI	8.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data