PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G15250.1   FTSH protease 6
Lab Annot. FtsH6
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41
Curated Location thylakoid-integral (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast14630971
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G15250.2 11Arabidopsis thaliana051495951 (1)C
AT2G30950.4 11Arabidopsis thaliana068165790 (0)C
AT2G30950.2 11Arabidopsis thaliana067965790 (0)C
Os06g12370.1 7Oryza sativa0598748612 (12)C
Os06g45820.1 7Oryza sativa06816780127 (127)C
Os06g45820.2 7Oryza sativa0451768839 (39)C
GRMZM2G048836_P01 3.21Zea mays063075856 (6)C
Zm00001eb279710_P001 agpv5Zea mays063075850 (0)C
v1_GRMZM2G048836_P01 4a53Zea mays063075854 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_14(1) AAA_16(1) AAA_17(1) AAA_18(1) AAA_2(1) AAA_22(2) AAA_25(2) AAA_
TargetP: Chloroplast (Class 1 C0.950; M0.034; S0.019; _0.034)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 688 aa (-cTP 613) (-lTP 606)
Molecular Weight 74.51 kDA(-cTP 66.42)(-lTP 65.68)
PI 7.21(-cTP 5.57)(-lTP 5.393)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help