PPDB

The Plant Proteome Database

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AT5G15230.1   GAST1 protein homolog 4

Lab Annot.
Mapman: 17.6.3 hormone metabolism.gibberelin.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G15230.2 11Arabidopsis thaliana6E-57831001005 (4)C
AT1G74670.1 11Arabidopsis thaliana5E-3810657674 (4)S
AT2G30810.1 11Arabidopsis thaliana2E-2110648630 (0)S
Os09g24840.1 7Oryza sativa2E-2811045590 (0)S
Os09g24840.2 7Oryza sativa2E-2811045590 (0)S
Os06g15620.1 7Oryza sativa7E-276569780 (0)S
GRMZM2G172596_P01 3.21Zea mays2E-287265770 (0)S
v1_GRMZM2G172596_P01 4a53Zea mays2E-287265770 (0)S
Zm00001eb438860_P001 agpv5Zea mays2E-287265770 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Bac_transf(2) Cadherin_C_2(1) GASA(1)
TargetP: Secreted (Class 1 C0.011; M0.015; S0.944; _0.024)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 106 aa (-cTP 51)
Molecular Weight 12.00 kDA(-cTP )
PI 9.46(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help