PPDB

 The Plant Proteome Database

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AT5G14460.1   Pseudouridine synthase family protein
Lab Annot. pseudouridylate synthase TruB protein
Mapman: 23.5.2 nucleotide metabolism.deoxynucleotide metabolism.pseudouridine synthase
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G57150.1 11Arabidopsis thaliana2E-19202335024 (16)_
Os05g01750.1 7Oryza sativa041266730 (0)M
Os05g01750.2 7Oryza sativa2E-11831360670 (0)M
Os03g25450.1 7Oryza sativa1E-2119234500 (0)_
GRMZM2G174716_P01 3.21Zea mays052456669 (9)M
v1_GRMZM2G174716_P01 4a53Zea mays052456666 (6)M
Zm00001eb267110_P001 agpv5Zea mays052456660 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: TruB_C_2(1) TruB_N(1)
TargetP: Chloroplast (Class 3 C0.741; M0.303; S0.005; _0.020)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 540 aa (-cTP 477)
Molecular Weight 61.49 kDA(-cTP 54.16)
PI 8.93(-cTP 8.24)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 19376835(leaf phosphoproteins)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help