PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G14250.2   Proteasome component (PCI) domain protein

Lab Annot. COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)
Mapman: 30.11.1 signalling.light.COP9 signalosome
Curated Location
TAIR curated location: signalosome complex11019806
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G14250.1 11Arabidopsis thaliana03429910031 (9)_
Os08g02550.1 7Oryza sativa2E-11734152681 (1)_
Zm00001eb261210_P001 agpv5Zea mays5E-11934154690 (0)_
Zm00001eb173540_P002 agpv5Zea mays3E-11634353670 (0)_
GRMZM2G008273_P02 3.21Zea mays3E-116343536723 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: L27(2) PCI(2)
TargetP: Cytoplasm (Class 4 C0.180; M0.080; S0.222; _0.465)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 356 aa (-cTP 353)
Molecular Weight 39.33 kDA(-cTP )
PI 7.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help