PPDB

 The Plant Proteome Database

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AT5G14200.2   isopropylmalate dehydrogenase 1
Lab Annot. 3-isopropylmalate dehydrogenase-2, also involved in glucosinolate synthesis
Mapman: 13.1.4.4.3 amino acid metabolism.synthesis.branched chain group.leucine specific.3-isopropylmalate dehydrogenase
Curated Location plastid stroma (Pubmed: 23198870 19674406 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G14200.1 11Arabidopsis thaliana02839999356 (245)_
AT5G14200.3 11Arabidopsis thaliana02839999337 (227)_
AT1G31180.1 11Arabidopsis thaliana02839093301 (219)M
Os03g45320.2 7Oryza sativa3E-135249738511 (11)C
Os03g45320.1 7Oryza sativa2E-134249738536 (36)C
Os01g16900.1 7Oryza sativa1E-11230264424 (24)M
Zm00001eb076030_P001 agpv5Zea mays1E-13424974868 (8)M
GRMZM5G803490_P01 3.21Zea mays1E-134249748688 (85)M
v1_GRMZM2G145805_P01 4a53Zea mays2E-133249738571 (71)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Iso_dh(1)
TargetP: Cytoplasm (Class 5 C0.256; M0.211; S0.073; _0.303)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 300 aa (-cTP 264)
Molecular Weight 33.10 kDA(-cTP )
PI 8.61(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
195_194Detail       leaf [A. thaliana] chloroplast stromaffc1-2
249_250Detail       leaf [A. thaliana] chloroplast stromaffc1-2
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1724Detail        [A. thaliana]  
1870Detail       Total leaf [A. thaliana] Stroma wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2209Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 10
2211Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 12
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2601Detail       Rosettes [A. thaliana] total leaf tissue fmtclpc1

* For details about the exprimental sources click here.

Published Proteomics Data

 15815986(seedling)
15815986(Leaf)
18538804(total leaf)
17916636(root (NaCl stress))
18431481(chloroplast)
18814325(cotyledons)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
19888209(80S polysomal fraction)
19888209(leaves)
19376835(leaf phosphoproteins)
19423572(leaf (wt and clpr2-1))
19995723(chloroplast reference proteome)
21311031(mitochondria)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help