PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G13870.1   xyloglucan endotransglucosylase/hydrolase 5

Lab Annot.
Mapman: 10.7 cell wall.modification
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G13870.3 11Arabidopsis thaliana02931001000 (0)S
AT5G13870.2 11Arabidopsis thaliana02931001000 (0)S
AT2G06850.1 11Arabidopsis thaliana6E-1792877789393 (190)S
Os11g33270.1 7Oryza sativa6E-16929472840 (0)S
Os06g48160.1 7Oryza sativa5E-9729549643 (3)S
Os07g34580.1 7Oryza sativa2E-9526353660 (0)S
Zm00001eb197870_P001 agpv5Zea mays2E-16427777860 (0)S
GRMZM2G004699_P01 3.21Zea mays2E-16427777868 (8)S
v1_GRMZM2G004699_P01 4a53Zea mays2E-16427777865 (5)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glyco_hydro_16(1) XET_C(1)
TargetP: Secreted (Class 1 C0.038; M0.102; S0.903; _0.061)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 293 aa (-cTP 278)
Molecular Weight 33.95 kDA(-cTP )
PI 8.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help