PPDB

 The Plant Proteome Database

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AT5G13770.1   Pentatricopeptide repeat (PPR-like) superfamily protein
Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G16010.1 11Arabidopsis thaliana1E-2941024440 (0)M
AT5G42310.1 11Arabidopsis thaliana2E-29491214296 (83)M
AT3G22470.2 11Arabidopsis thaliana4E-2854523400 (0)M
Os04g49350.1 7Oryza sativa8E-15958342610 (0)C
Os01g63400.1 7Oryza sativa3E-3156223430 (0)_
Os01g63400.2 7Oryza sativa3E-3156223430 (0)_
Zm00001eb072910_P001 agpv5Zea mays8E-14653243610 (0)C
Zm00001eb072910_P002 agpv5Zea mays8E-14653243610 (0)C
v1_GRMZM2G076771_P01 4a53Zea mays8E-146532436118 (18)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Com_YlbF(4) DUF3368(2) Exog_C(4) PPR(11) PPR_1(6) PPR_2(10) PPR_3(10) PPR_long(4
TargetP: Chloroplast (Class 2 C0.803; M0.202; S0.031; _0.187)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 609 aa (-cTP 565)
Molecular Weight 69.51 kDA(-cTP 64.65)
PI 9.07(-cTP 8.98)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help