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PPDB	The Plant Proteome Database

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AT5G13730.1 sigma factor 4

Lab Annot.

SIG4 sigma factor (SigD)
Mapman: 27.2 RNA.transcription

Curated Location

plastid (Pubmed: 23198870 18431481 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G08540.1 11 Arabidopsis thaliana 1E-54 300 36 58 0 (0) C
AT2G36990.1 11 Arabidopsis thaliana 5E-48 377 31 51 0 (0) C
AT1G64860.1 11 Arabidopsis thaliana 5E-39 309 35 53 0 (0) _
Os11g26160.1 7 Oryza sativa 9E-49 302 37 56 0 (0) C
Os03g16430.2 7 Oryza sativa 9E-43 227 38 60 0 (0) C
Os08g14450.1 7 Oryza sativa 3E-41 238 34 56 0 (0) C
Zm00001eb169360_P003 agpv5 Zea mays 2E-48 251 40 59 0 (0) C
Zm00001eb012130_P005 agpv5 Zea mays 7E-47 292 33 56 0 (0) M
Zm00001eb169360_P001 agpv5 Zea mays 8E-47 251 40 59 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HTH_11(2) HTH_24(3) HTH_AsnC-type(2) Sigma70_r2(1) Sigma70_r3(2) Sigma70_r4(2) S
TargetP:	Chloroplast (Class 2 C0.871; M0.066; S0.012; _0.168)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:	79
Length	419 aa (-cTP 367) (-lTP 312)
Molecular Weight	47.16 kDA(-cTP 41.80)(-lTP 35.33)
PI	9.65(-cTP 9.69)(-lTP 9.728)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
325	Detail								BY2 cell suspension [Tobacco]	cell wall enriched	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data