PPDB

 The Plant Proteome Database

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AT5G13560.1   structural maintenance of chromosomes protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G37370.2 11Arabidopsis thaliana068047670 (0)_
AT2G37370.3 11Arabidopsis thaliana068047670 (0)_
AT2G37370.1 11Arabidopsis thaliana068047670 (0)_
Os05g06980.1 7Oryza sativa068549660 (0)M
Os01g06270.1 7Oryza sativa2E-17455051700 (0)S
Os03g17270.1 7Oryza sativa2E-17267644640 (0)M
Zm00001eb123790_P002 agpv5Zea mays068350690 (0)M
GRMZM2G030235_P01 3.21Zea mays068150670 (0)M
v1_GRMZM2G030235_P01 4a53Zea mays068150670 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Fib_alpha(6) HXXSHH(1) Lectin_N(2)
TargetP: Cytoplasm (Class 4 C0.066; M0.452; S0.035; _0.687)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 679 aa (-cTP 674)
Molecular Weight 76.65 kDA(-cTP )
PI 5.02(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2250Detail       seedlings [A. thaliana] total tissue atg5
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

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