PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G13390.1   no exine formation 1

Lab Annot. NEF1 - (no exine formation) - lipid accumulation
Mapman: 11 lipid metabolism
Curated Location plastid (Pubmed: 15225283 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G13390.2 11Arabidopsis thaliana0112699990 (0)C
Os11g32470.1 7Oryza sativa046859782 (2)C
Zm00001eb113290_P003 agpv5Zea mays0104561780 (0)C
Zm00001eb113290_P002 agpv5Zea mays0104561780 (0)C
GRMZM2G056103_P02 3.21Zea mays0104561780 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 7tm_2(1) AmoA(1) COPI_assoc(1) Cytochrom_C_asm(1) DUF368(1) DUF456(1) DUF81(1) M
TargetP: Chloroplast (Class 3 C0.736; M0.112; S0.001; _0.154)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 27 TMs
Aramemnon: 29 TMs
TAT position:
Length 1123 aa (-cTP 1064) (-lTP 1004)
Molecular Weight 124.28 kDA(-cTP 117.73)(-lTP 111.49)
PI 9.12(-cTP 9.01)(-lTP 9.040)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help