PPDB

 The Plant Proteome Database

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AT5G13370.1   Auxin-responsive GH3 family protein
Lab Annot. auxin-responsive GH3 protein
Mapman: 17.2.3 hormone metabolism.auxin.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G13360.3 11Arabidopsis thaliana0595859320 (6)_
AT5G13360.1 11Arabidopsis thaliana0595859320 (6)_
AT5G13360.2 11Arabidopsis thaliana0595859320 (6)_
Os07g47490.2 7Oryza sativa058150670 (0)_
Os07g47490.1 7Oryza sativa058150670 (0)_
Os07g47490.3 7Oryza sativa056950670 (0)_
Zm00001eb113360_P002 agpv5Zea mays060349660 (0)_
Zm00001eb113360_P003 agpv5Zea mays060349660 (0)_
GRMZM2G410567_P01 3.21Zea mays060349660 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: GH3(1)
TargetP: Cytoplasm (Class 2 C0.042; M0.108; S0.138; _0.772)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 595 aa (-cTP 567)
Molecular Weight 66.98 kDA(-cTP )
PI 5.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2286Detail        [A. thaliana] Clp C1 WT
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help