PPDB

 The Plant Proteome Database

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AT5G13010.1   RNA helicase family protein
Lab Annot. RNA helicase protein
Mapman: 27.1.2 RNA.processing.RNA helicase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G26560.1 11Arabidopsis thaliana0829476610 (2)_
AT2G35340.1 11Arabidopsis thaliana069647690 (0)S
AT2G35340.2 11Arabidopsis thaliana069647690 (0)_
Os07g32430.1 7Oryza sativa01320687910 (10)_
Os02g19860.1 7Oryza sativa077249695 (5)_
Os06g23530.1 7Oryza sativa086645650 (0)M
v1_GRMZM2G480809_P01 4a53Zea mays0127570797 (7)C
GRMZM2G480809_P01 3.21Zea mays0127570798 (1)C
Zm00001eb105730_P001 agpv5Zea mays0125871800 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_14(1) AAA_19(1) AAA_22(1) AAA_23(2) AAA_24(1) AAA_30(1) AAA_33(1) ABC_tran(1
TargetP: Cytoplasm (Class 1 C0.115; M0.062; S0.023; _0.955)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1255 aa (-cTP 1211)
Molecular Weight 141.86 kDA(-cTP )
PI 6.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1870Detail       Total leaf [A. thaliana] Stroma wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 19114538(guard cells Arabidopsis leaf)
20813957(SUMO proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help