PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G13000.1   glucan synthase-like 12

Lab Annot. glucan synthase-like 12
Mapman: 3.6 minor CHO metabolism.callose
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G13000.2 11Arabidopsis thaliana0195597975 (5)M
AT1G05570.3 11Arabidopsis thaliana0196376870 (0)_
AT1G05570.4 11Arabidopsis thaliana0196376870 (0)_
Os03g03610.1 7Oryza sativa0196271830 (0)M
Os03g03610.3 7Oryza sativa0196271830 (0)M
Os03g03610.2 7Oryza sativa0196271830 (0)M
v1_GRMZM2G430680_P02 4a53Zea mays0195076867 (7)C
GRMZM2G430680_P02 3.21Zea mays01950768613 (13)C
Zm00001eb271900_P001 agpv5Zea mays0195076860 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FKS1_dom1(1) Glucan_synthase(2) Vta1(1)
TargetP: Mitochondria (Class 5 C0.224; M0.493; S0.016; _0.315)
Predotar:
Subcel. Location:
TM-HMM prediction: 17 TMs
Aramemnon: 10 TMs
TAT position:
Length 1955 aa (-cTP 1933)
Molecular Weight 226.18 kDA(-cTP )
PI 9.12(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
2013Detail       leaf [A. thaliana] total leaf tissue wt

* For details about the exprimental sources click here.

Published Proteomics Data

14506206(Plasma Membrane proteome)
14506206(plasma membrane (phosphorylated))
17317660(Plasma Membrane proteome)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21533090(plasmodesmata-crude)
20843791(DRM-enriched plasmamembrane)
20733066(phosphoproteome-ABA-leaf)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help