PPDB

PPDB	The Plant Proteome Database

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AT5G12440.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein

Lab Annot.

CCCH-type zinc fingerprotein with RNA-binding domain
Mapman: 27.3.12 RNA.regulation of transcription.C3H zinc finger family

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G12440.7 11 Arabidopsis thaliana 0 650 100 100 0 (0) _
AT5G12440.9 11 Arabidopsis thaliana 0 650 100 100 0 (0) _
AT5G12440.4 11 Arabidopsis thaliana 0 650 100 100 0 (0) _
Os07g48410.1 7 Oryza sativa 2E-89 707 33 49 0 (0) _
Os07g48410.2 7 Oryza sativa 2E-89 707 33 49 0 (0) _
Os03g21140.2 7 Oryza sativa 6E-88 687 34 51 0 (0) _
GRMZM2G311665_P01 3.21 Zea mays 6E-85 567 36 54 0 (0) _
v1_GRMZM2G311665_P01 4a53 Zea mays 6E-85 567 36 54 0 (0) _
Zm00001eb330830_P001 agpv5 Zea mays 6E-85 567 36 54 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RNA_bind(1) RRM_1(1) Torus(1) zf-CCCH(1) zf-CCCH_2(1) zf-CCCH_4(1) zf_CCCH_4(1)
TargetP:	Cytoplasm (Class 1 C0.021; M0.036; S0.010; _0.953)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	650 aa (-cTP 635)
Molecular Weight	71.96 kDA(-cTP )
PI	5.79(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data