PPDB

PPDB	The Plant Proteome Database

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AT5G12400.1 PHD-finger and DNA binding domain-containing protein

Lab Annot.

DNA binding;zinc ion binding;DNA binding
Mapman: 27.3.63 RNA.regulation of transcription.PHD finger transcription factor

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G22760.1 11 Arabidopsis thaliana 3E-132 1267 27 44 0 (0) _
AT5G22760.2 11 Arabidopsis thaliana 9E-118 1000 28 46 0 (0) _
AT5G22760.3 11 Arabidopsis thaliana 6E-100 1150 25 42 0 (0) _
Os07g46690.1 7 Oryza sativa 0 1229 35 52 0 (0) _
Os11g05130.2 7 Oryza sativa 1E-63 345 40 57 0 (0) _
Os11g05130.1 7 Oryza sativa 1E-63 345 40 57 0 (0) _
v1_GRMZM2G128176_P03 4a53 Zea mays 0 1243 34 50 6 (6) M
GRMZM2G128176_P01 3.21 Zea mays 0 1244 35 51 0 (0) M
GRMZM2G128176_P03 3.21 Zea mays 0 1244 35 51 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CHZ(3) Collagen_bind(1) DDT(1) PHD(3) PHD_2(2) WHIM1(1) zf-PHD-like(3)
TargetP:	Cytoplasm (Class 4 C0.012; M0.403; S0.051; _0.779)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1602 aa (-cTP 1523)
Molecular Weight	179.98 kDA(-cTP )
PI	8.95(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2047	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data