PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G12290.1 dgd1 suppressor 1

Lab Annot.

digalactolipid-deficient DGD1 SUPPRESSOR 1 (DGS1)
Mapman: 35.2 not assigned.unknown

Curated Location

mitochondria (Pubmed: 18208519 )

TAIR curated location: mitochondrion14671022

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G12290.4 11 Arabidopsis thaliana 0 602 100 100 0 (0) C
AT5G12290.3 11 Arabidopsis thaliana 0 529 100 100 0 (0) C
AT5G12290.2 11 Arabidopsis thaliana 0 529 100 100 0 (0) C
Os03g26030.1 7 Oryza sativa 4E-162 532 46 68 0 (0) C
Os03g24050.1 7 Oryza sativa 4E-87 506 35 56 0 (0) C
Os03g26000.1 7 Oryza sativa 1E-82 282 44 70 0 (0) C
Zm00001eb017230_P002 agpv5 Zea mays 7E-176 580 45 67 0 (0) C
Zm00001eb017230_P001 agpv5 Zea mays 8E-176 580 45 68 0 (0) C
AC204530.4_FGP002 3.21 Zea mays 8E-176 580 45 68 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Baculo_PEP_C(3) NCA2(1) XFP_N(1)
TargetP:	Chloroplast (Class 4 C0.804; M0.027; S0.004; _0.494)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:
Length	602 aa (-cTP 504)
Molecular Weight	68.89 kDA(-cTP 58.11)
PI	6.62(-cTP 6.48)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
16618929(MITO/PLASTID-LOPIT-callus)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21311031(mitochondria)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data